{
  "_id": "6a115c32acfb0bcc41cec4b0",
  "Package": "allelematch",
  "Type": "Package",
  "Title": "Identifying Unique Multilocus Genotypes where Genotyping Error\nand Missing Data may be Present",
  "Version": "2.5.5",
  "Date": "2025-07-26",
  "Author": "Paul Galpern [aut], Micheline Manseau [aut], Pete Hettinga\n[aut], Karen Smith [aut], Paul Wilson [aut], Todd Cross [cre]",
  "Authors@R": "c(person(given = \"Paul\",\nfamily = \"Galpern\",\nrole = c(\"aut\"),\nemail = \"pgalpern@gmail.com\"\n),\nperson(given = \"Micheline\",\nfamily = \"Manseau\",\nrole = c(\"aut\")\n),\nperson(given = \"Pete\",\nfamily = \"Hettinga\",\nrole = c(\"aut\")\n),\nperson(given = \"Karen\",\nfamily = \"Smith\",\nrole = c(\"aut\")\n),\nperson(given = \"Paul\",\nfamily = \"Wilson\",\nrole = c(\"aut\")\n),\nperson(given = \"Todd\",\nfamily = \"Cross\",\nrole = c(\"cre\"),\nemail = \"todd.cross@gmail.com\")\n)",
  "Maintainer": "Todd Cross <todd.cross@gmail.com>",
  "Description": "Tools for the identification of unique of multilocus\ngenotypes when both genotyping error and missing data may be\npresent; targeted for use with large datasets and databases\ncontaining multiple samples of each individual (a common\nsituation in conservation genetics, particularly in\nnon-invasive wildlife sampling applications). Functions\nexplicitly incorporate missing data and can tolerate allele\nmismatches created by genotyping error. If you use this\npackage, please cite the original publication in Molecular\nEcology Resources (Galpern et al., 2012), the details for which\ncan be generated using citation('allelematch'). For a complete\nvignette, please access via the Data S1 Supplementary\ndocumentation and tutorials (PDF) located at\n<doi:10.1111/j.1755-0998.2012.03137.x>.",
  "License": "GPL (>= 2)",
  "URL": "<doi:10.1111%2Fj.1755-0998.2012.03137.x>",
  "LazyLoad": "yes",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-23 07:47:24 UTC",
    "User": "root"
  },
  "Repository": "https://noreastermt.r-universe.dev",
  "Date/Publication": "2025-07-26 21:20:01 UTC",
  "RemoteUrl": "https://github.com/cran/allelematch",
  "RemoteRef": "HEAD",
  "RemoteSha": "74591794845cea2fdf89afd56095ed4dfe5699e7",
  "MD5sum": "0a8cf0a7eecf77efda5cbedd3929b9c9",
  "_user": "noreastermt",
  "_type": "src",
  "_file": "allelematch_2.5.5.tar.gz",
  "_fileid": "24d8c4e7f47109e21f5a2ce3a9b32a839184918847dc8eb5723000998c10764e",
  "_filesize": 205979,
  "_sha256": "24d8c4e7f47109e21f5a2ce3a9b32a839184918847dc8eb5723000998c10764e",
  "_created": "2026-05-23T07:47:24.000Z",
  "_published": "2026-05-23T07:50:10.748Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77507248378,
      "time": 106,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7175414525"
    },
    {
      "job": 77507248384,
      "time": 99,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175413740"
    },
    {
      "job": 77507248382,
      "time": 135,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7175414436"
    },
    {
      "job": 77507248379,
      "time": 138,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175414809"
    },
    {
      "job": 77507126397,
      "time": 145,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175404047"
    },
    {
      "job": 77507248386,
      "time": 75,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175411300"
    },
    {
      "job": 77507248409,
      "time": 67,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7175410580"
    },
    {
      "job": 77507248406,
      "time": 64,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7175410383"
    },
    {
      "job": 77507248411,
      "time": 60,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175409982"
    }
  ],
  "_buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/allelematch",
  "_commit": {
    "id": "74591794845cea2fdf89afd56095ed4dfe5699e7",
    "author": "Todd Cross <todd.cross@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.5.5\n",
    "time": 1753564801
  },
  "_maintainer": {
    "name": "Todd Cross",
    "email": "todd.cross@gmail.com",
    "login": "noreastermt",
    "description": "",
    "uuid": 37628961
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "dynamicTreeCut",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "2.5.5",
      "date": "2025-07-26"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "pgalpern",
      "count": 5,
      "uuid": 17838624
    },
    {
      "user": "noreastermt",
      "count": 5,
      "uuid": 37628961
    }
  ],
  "_userbio": {
    "uuid": 37628961,
    "type": "user",
    "name": "NorEasterMT"
  },
  "_downloads": {
    "count": 398,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/allelematch"
  },
  "_mentions": 6,
  "_searchresults": 12,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/allelematch.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "noreastermt",
  "_cranurl": false,
  "_releases": [
    {
      "version": "2.0",
      "date": "2011-10-08"
    },
    {
      "version": "2.01",
      "date": "2012-01-11"
    },
    {
      "version": "2.02",
      "date": "2012-02-21"
    },
    {
      "version": "2.03",
      "date": "2013-01-14"
    },
    {
      "version": "2.5",
      "date": "2014-09-18"
    },
    {
      "version": "2.5.1",
      "date": "2019-04-15"
    },
    {
      "version": "2.5.2",
      "date": "2023-05-19"
    },
    {
      "version": "2.5.3",
      "date": "2023-08-24"
    },
    {
      "version": "2.5.4",
      "date": "2024-03-28"
    },
    {
      "version": "2.5.5",
      "date": "2025-08-01"
    }
  ],
  "_exports": [
    "amAlleleFreq",
    "amCluster",
    "amCSSForHTML",
    "amCSV.amCluster",
    "amCSV.amPairwise",
    "amCSV.amUnique",
    "amDataset",
    "amHTML.amCluster",
    "amHTML.amPairwise",
    "amHTML.amUnique",
    "amMatrix",
    "amPairwise",
    "amUnique",
    "amUniqueProfile",
    "print.amAlleleFreq",
    "print.amDataset",
    "summary.amCluster",
    "summary.amPairwise",
    "summary.amUnique"
  ],
  "_datasets": [
    {
      "name": "amExample1",
      "title": "Data sets to support the tutorials in the supplementary documentation and examples in the manual",
      "object": "amExample1",
      "file": "amExample1.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sampleId",
        "knownIndividual",
        "LOC1a",
        "LOC1b",
        "LOC2a",
        "LOC2b",
        "LOC3a",
        "LOC3b",
        "LOC4a",
        "LOC4b",
        "LOC5a",
        "LOC5b",
        "LOC6a",
        "LOC6b",
        "LOC7a",
        "LOC7b",
        "LOC8a",
        "LOC8b",
        "LOC9a",
        "LOC9b",
        "LOC10a",
        "LOC10b"
      ],
      "rows": 20,
      "table": true,
      "tojson": true
    },
    {
      "name": "amExample2",
      "title": "Data sets to support the tutorials in the supplementary documentation and examples in the manual",
      "object": "amExample2",
      "file": "amExample2.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sampleId",
        "knownIndividual",
        "LOC1a",
        "LOC1b",
        "LOC2a",
        "LOC2b",
        "LOC3a",
        "LOC3b",
        "LOC4a",
        "LOC4b",
        "LOC5a",
        "LOC5b",
        "LOC6a",
        "LOC6b",
        "LOC7a",
        "LOC7b",
        "LOC8a",
        "LOC8b",
        "LOC9a",
        "LOC9b",
        "LOC10a",
        "LOC10b"
      ],
      "rows": 148,
      "table": true,
      "tojson": true
    },
    {
      "name": "amExample3",
      "title": "Data sets to support the tutorials in the supplementary documentation and examples in the manual",
      "object": "amExample3",
      "file": "amExample3.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sampleId",
        "knownIndividual",
        "LOC1a",
        "LOC1b",
        "LOC2a",
        "LOC2b",
        "LOC3a",
        "LOC3b",
        "LOC4a",
        "LOC4b",
        "LOC5a",
        "LOC5b",
        "LOC6a",
        "LOC6b",
        "LOC7a",
        "LOC7b",
        "LOC8a",
        "LOC8b",
        "LOC9a",
        "LOC9b",
        "LOC10a",
        "LOC10b"
      ],
      "rows": 319,
      "table": true,
      "tojson": true
    },
    {
      "name": "amExample4",
      "title": "Data sets to support the tutorials in the supplementary documentation and examples in the manual",
      "object": "amExample4",
      "file": "amExample4.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sampleId",
        "knownIndividual",
        "LOC1a",
        "LOC1b",
        "LOC2a",
        "LOC2b",
        "LOC3a",
        "LOC3b",
        "LOC4a",
        "LOC4b",
        "LOC5a",
        "LOC5b",
        "LOC6a",
        "LOC6b",
        "LOC7a",
        "LOC7b",
        "LOC8a",
        "LOC8b",
        "LOC9a",
        "LOC9b",
        "LOC10a",
        "LOC10b"
      ],
      "rows": 307,
      "table": true,
      "tojson": true
    },
    {
      "name": "amExample5",
      "title": "Data sets to support the tutorials in the supplementary documentation and examples in the manual",
      "object": "amExample5",
      "file": "amExample5.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sampleId",
        "samplingData",
        "gender",
        "LOC1a",
        "LOC1b",
        "LOC2a",
        "LOC2b",
        "LOC3a",
        "LOC3b",
        "LOC4a",
        "LOC4b",
        "LOC5a",
        "LOC5b",
        "LOC6a",
        "LOC6b",
        "LOC7a",
        "LOC7b",
        "LOC8a",
        "LOC8b",
        "LOC9a",
        "LOC9b",
        "LOC10a",
        "LOC10b"
      ],
      "rows": 335,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "allelematch-package",
      "title": "Identification of unique multilocus genotypes",
      "topics": [
        "allelematch-package",
        "allelematch",
        "allelematch-tutorial"
      ]
    },
    {
      "page": "amAlleleFreq",
      "title": "Determine allele frequencies",
      "topics": [
        "amAlleleFreq",
        "print.amAlleleFreq"
      ]
    },
    {
      "page": "amCluster",
      "title": "Clustering of multilocus genotypes",
      "topics": [
        "amCluster",
        "amCSV.amCluster",
        "amHTML.amCluster",
        "summary.amCluster"
      ]
    },
    {
      "page": "amCSSForHTML",
      "title": "Produce cascading style sheet (CSS) for HTML",
      "topics": [
        "amCSSForHTML"
      ]
    },
    {
      "page": "amDataset",
      "title": "Prepare a dataset for use with allelematch",
      "topics": [
        "amDataset",
        "print.amDataset"
      ]
    },
    {
      "page": "amExampleData",
      "title": "Data sets to support the tutorials in the supplementary documentation and examples in the manual",
      "topics": [
        "amExample1",
        "amExample2",
        "amExample3",
        "amExample4",
        "amExample5",
        "amExampleData"
      ]
    },
    {
      "page": "amMatrix",
      "title": "Produce a dissimilarity matrix for pairs of multilocus genotypes",
      "topics": [
        "amMatrix"
      ]
    },
    {
      "page": "amPairwise",
      "title": "Pairwise matching of multilocus genotypes",
      "topics": [
        "amCSV.amPairwise",
        "amHTML.amPairwise",
        "amPairwise",
        "summary.amPairwise"
      ]
    },
    {
      "page": "amUnique",
      "title": "Identification of unique genotypes",
      "topics": [
        "amCSV.amUnique",
        "amHTML.amUnique",
        "amUnique",
        "summary.amUnique"
      ]
    },
    {
      "page": "amUniqueProfile",
      "title": "Determine optimal parameter values for the identification of unique genotypes",
      "topics": [
        "amUniqueProfile"
      ]
    }
  ],
  "_rundeps": [
    "dynamicTreeCut"
  ],
  "_score": 1.8573324964312685,
  "_indexed": true,
  "_nocasepkg": "allelematch",
  "_universes": [
    "noreastermt"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.5.5",
      "date": "2026-05-23T07:49:10.000Z",
      "distro": "noble",
      "commit": "74591794845cea2fdf89afd56095ed4dfe5699e7",
      "fileid": "36a2bbdab8dc2ad8332495734d8872d99ec1ac06176d695c57fa25cc81bbd19e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.5.5",
      "date": "2026-05-23T07:49:06.000Z",
      "distro": "noble",
      "commit": "74591794845cea2fdf89afd56095ed4dfe5699e7",
      "fileid": "741deee13de46ec8faa295f2d805423d3a5e9724d4dd42c115b279cefb3939a2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.5.5",
      "date": "2026-05-23T07:49:17.000Z",
      "commit": "74591794845cea2fdf89afd56095ed4dfe5699e7",
      "fileid": "cef5cefa234aeac3a674111c9f10104d67a6a24bae5c76d54ae4f15917596bfa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.5.5",
      "date": "2026-05-23T07:49:18.000Z",
      "commit": "74591794845cea2fdf89afd56095ed4dfe5699e7",
      "fileid": "3b1bfb4d75e139482fca82873f324a7fd4b7111ad91f928812f4f89c4bc7648c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.5.5",
      "date": "2026-05-23T07:48:55.000Z",
      "commit": "74591794845cea2fdf89afd56095ed4dfe5699e7",
      "fileid": "c9f9a931065e88bfe29831e666d6996269128bbdd59e82c80ff878ae0dbc974d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.5.5",
      "date": "2026-05-23T07:48:25.000Z",
      "commit": "74591794845cea2fdf89afd56095ed4dfe5699e7",
      "fileid": "05dfbb32da1d729bd2b9516ec0f59ce97381f2c6243be8df99b5226243eb44e5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.5.5",
      "date": "2026-05-23T07:48:26.000Z",
      "commit": "74591794845cea2fdf89afd56095ed4dfe5699e7",
      "fileid": "d730dc471af002b00d803b6800896d90599b13c2fa6824a9912891f5d25ffa69",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.5.5",
      "date": "2026-05-23T07:48:22.000Z",
      "commit": "74591794845cea2fdf89afd56095ed4dfe5699e7",
      "fileid": "2c5c664b147007479c601b4b3003afebf5423b3fc84bac1b7fdac3c73964f429",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/noreastermt/actions/runs/26327267749"
    }
  ]
}